610
Defining the Upper and Lower Phenotypic Clinical Cut-offs for Darunavir/Ritonavir by the PhenoSense Assay
Eoin Coakley*1, C Chappey1, J Benhamida1, G Picchio2, and M P de Béthune3
1Monogram Biosci, South San Francisco, CA, US; 2Tibotec Inc, Yardley, PA, US; and 3Tibotec BVBA, Mechelen, Belgium
Background: The POWER 1, 2, and
3 trials demonstrated high efficacy of darunavir/ritonavir (DRV/r) in treatment-experienced
patients. We defined the upper and lower clinical cut-offs for DRV/r within
these trials datasets by evaluating week-4 HIV RNA outcomes.
Methods: Phenotyping of a
set (n = 184) of baseline samples was
by PhenoSense HIV (Monogram Biosciences). This dataset was restricted to
patients in whom the on-study regimen did not include enfuvirtide (T-20). The lower
clinical cut-off was defined as the fold change where the HIV RNA response was
first observed to decline relative to the wild type reference population. The upper
clinical cut-off was defined as the fold change above which the attributable
HIV RNA change from baseline was less than –0.3 log10 copies/mL. The
effect of the on-study background therapy was explored by deriving PhenoSense
specific continuous phenotypic susceptibility scores for the drugs in each
regimen. Linear regression and local linear fitting by the function lowess were
used to define the optimal correlation between the baseline DRV fold change and
the week-4 change in HIV RNA (log10 copies/mL).
Results: Among the 184
analyzed subjects, 87 received functional DRV/r monotherapy, ie, their
optimized background regimen was scored as phenotypic susceptibility scores = 0.
Within this subset the baseline DRV fold change correlated with the week-4 HIV
RNA change from baseline (R = 0.42, p <0.0001). From the lowest DRV fold
change (0.42) to fold change 10 the week-4 HIV RNA reductions were constant
(median –1.99 log10 copies/mL). Thus, the lower clinical cut-off was
defined as a fold change of 10. For DRV fold change >10 a gradual reduction
in HIV RNA response was observed as fold change increased (R = 0.37, p = 0.015,
median week-4 HIV RNA change –1.11 log10 copies/mL). Within this
distribution the upper clinical cut-off for DRV was defined as a fold change of
90. The median HIV RNA change for samples with fold change 10 to <40 and 40
to <90 was –1.34 (–2.66 to 0.15) and –0.39 (–2.93 to 0.28) log10
copies/mL, respectively. Analyses at study weeks 2 and 8 were concordant with
the week-4 findings. Applying these clinical cut-offs to the 184 phenotyped
baseline samples, the proportions fully susceptible were: DRV/r, 53.8%; tipranavir
(TPV)/r, 33.7%; amprenavir (APV)/r, 18.5%; atazanavir (ATV)/r, 14.6%; lopinavir
(LPV)/r, 11.4%, and saquinavir (SQV)/r, 9.8%. By contrast the proportions above
the upper clinical cut-offs were: DRV/r,
3%; TPV/r, 31%; APV/r, 66.3%; LPV/r, 70%, and SQV/r, 71.7%.
Conclusions: In the POWER
trials, DRV/r demonstrated optimal anti-HIV activity with a fold change £10 and reduced anti-HIV activity with fold change >10.
These analyses defined the phenotypic lower and upper clinical cut-offs for
DRV/r at 10-fold change and 90-fold change, respectively.
|